Nanobio - Sequencing, Sensing, Biological Channels:

  • A. Barati Farimani, M. Heiranian and N. R. Aluru, ``Identification of amino acids with sensitive nanoporous MoS2: towards machine learning-based prediction'', npj 2D Materials and Applications, Vol. 2, Art. No. 14, 2018. DOI: 10.1038/s41699-018-0060-8 [pdf file]; Supporting information [pdf file]

  • A. Barati Farimani, M. Heiranian, K. Min and N. R. Aluru, ``Antibody subclass detection using graphene nanopores'', Journal of Physical Chemistry Letters, Vol. 8, No. 7, pp. 1670-1676, 2017. [pdf file]; Supporting information [pdf file]

  • A. Barati Farimani, P. Dibaeinia and N. R. Aluru, ``DNA origami-graphene hybrid nanopore for DNA detection'', ACS Applied Materials & Interfaces, Vol. 9, No. 1, pp. 92-100, 2017. [pdf file]; Supporting information [pdf file]

  • H. Fang, J. Zhao, K. J. Yu, E. Song, A. Barati Farimani, C.-H. Chiang, X. Jin, Y. Xue, D. Xu, W. Du, K. J. Seo, Y. Zhong, Z. Yang, S. M. Won, G. Fang, S. W. Choi, S. Chaudhuri, Y. Huang, M. A. Alam, J. Viventi, N. R. Aluru, and J. A. Rogers, ``Ultrathin, transferred layers of thermally grown silicon dioxide as biofluid barriers for biointegrated flexible electronic systems'', Proceedings of the National Academy of Sciences of the United States of America, Vol. 113, No. 42, pp. 11682-11687, 2016. [pdf file]; Supporting information [pdf file]

  • A. Barati Farimani, M. Heiranian and N. R. Aluru, ``Electromechanical signatures for DNA sequencing through a mechanosensitive nanopore'', Journal of Physical Chemistry Letters, Vol. 6, No. 4, pp. 650-657, 2015. [pdf file]; Correction [pdf file]; Supporting information [pdf file]

  • A. Barati Farimani, K. Min and N. R. Aluru, ``DNA base detection using a single-layer MoS2'', ACS Nano, Vol. 8, No. 8, pp. 7914-7922, 2014. [pdf file]; Supporting information [pdf file]

  • A. Barati Farimani, N. R. Aluru and E. Tajkhorshid, ``Thermodynamic insight into spontaneous hydration and rapid water permeation in aquaporins'', Applied Physics Letters, Vol. 105, No. 8, Art. No. 083702, 2014. [pdf file]

  • S. Banerjee, J. Shim, J. Rivera, X. Jin, D. Estrada, V. Solovyeva, X. You, J. Pak, E. Pop, N. R. Aluru and R. Bashir, ``Electrochemistry at the edge of a single graphene layer in a nanopore'', ACS Nano, Vol. 7, No. 1, pp. 834-843, 2013. [pdf file]

  • B. M. Venkatesan, D. Estrada, S. Banerjee, X. Jin, V. E. Dorgan, M. Bae, N. R. Aluru, E. Pop, R. Bashir, ``Stacked graphene-Al2O3 nanopore sensors for sensitive detection of DNA and DNA-protein complexes'', ACS Nano, Vol. 6, No. 1, pp. 441-450, 2012. [pdf file]

  • Z. Chen, Y. Jiang, D. Dunphy, D. Adams, C. Hodges, N. Liu, N. Zhang, G. Xomeritakis, X. Jin, N. R. Aluru, S. Gaik, H. Hillhouse, C. J. Brinker, ``DNA translocation through an array of kinked nanopores'', Nature Materials, Vol. 9, No. 8, pp. 667-675, 2010. [pdf file]

  • J. Park and N. R. Aluru, ``Water film thickness-dependent conformation and diffusion of single-strand DNA on poly(ethylene glycol)-silane surface'', Applied Physics Letters, Vol. 96, No. 12, Art. No. 123703, 2010. [pdf file]

  • Y. Xu, X. Mi and N. R. Aluru, ``Detection of defective DNA in carbon nanotubes by combined molecular dynamics/tight-binding technique'', Applied Physics Letters, Vol. 95, No. 11, Art. No. 113116, 2009. [pdf file]

  • T.A. Van Der Straaten, J. M. Tang, U. Ravaioli, R. S. Eisenberg and N. R. Aluru, ``Simulating ion permeation through the ompF porin ion channel using three-dimensional drift-diffusion theory'', Journal of Computational Electronics, Vol. 2, No. 1, pp. 29-47, 2003. [pdf file]

  • T. A. van der Straaten, J. Tang, R. S. Eisenberg, U. Ravaioli and N. R. Aluru, ``Three-dimensional continuum simulations of ion transport through biological ion channels: Effect of charge distribution in the constriction region of porin'', Journal of Computational Electronics, Vol. 1, No. 3, pp. 335-340, October 2002. [pdf file]

  • K. Hess, U. Ravaioli, M. Gupta, N. R. Aluru, T. van der Straaten and R. S. Eisenberg, ``Simulation of biological ionic channels by technology computer-aided design'', VLSI Design, Vol. 13, No. 1-4, pp. 179-187, 2001. [pdf file]